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5SR0

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z3649721459 - (R,S) and (S,R) isomers

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-10-15
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.88556
Spacegroup nameP 43
Unit cell lengths88.766, 88.766, 39.506
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.700 - 1.050
R-factor0.1415
Rwork0.141
R-free0.16030
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS (Jan 10, 2022)
Data scaling softwareXSCALE
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.70039.7001.120
High resolution limit [Å]1.0503.1501.050
Rmerge0.0840.0600.594
Rmeas0.0920.0660.650
Total number of observations906898
Number of reflections142578553822724
<I/σ(I)>8.3521.941.39
Completeness [%]99.899.998.9
Redundancy6.3616.2036.244
CC(1/2)0.9980.9970.893
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP9.5293100 mM CHES, 28% PEG 3000

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PDB entries from 2024-05-15

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