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5SQP

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z5028367859 - (S) isomer

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-10-15
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.88557
Spacegroup nameP 43
Unit cell lengths88.807, 88.807, 39.549
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.720 - 1.050
R-factor0.1438
Rwork0.143
R-free0.15900
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS (Jan 10, 2022)
Data scaling softwareXSCALE
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.72039.7201.120
High resolution limit [Å]1.0503.1501.050
Rmerge0.0570.0400.671
Rmeas0.0620.0430.733
Total number of observations911401
Number of reflections143031553922873
<I/σ(I)>12.4534.691.79
Completeness [%]99.899.899.3
Redundancy6.3726.2516.22
CC(1/2)0.9990.9980.896
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP9.5293100 mM CHES, 28% PEG 3000

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PDB entries from 2024-05-15

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