5SOP
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC001364194305 - (R) isomer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-25 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.88557 |
Spacegroup name | P 43 |
Unit cell lengths | 88.736, 88.736, 39.204 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.680 - 1.050 |
R-factor | 0.1574 |
Rwork | 0.157 |
R-free | 0.17360 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS (Jan 10, 2022) |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.680 | 39.680 | 1.110 |
High resolution limit [Å] | 1.050 | 3.140 | 1.050 |
Rmerge | 0.037 | 0.022 | 0.605 |
Rmeas | 0.040 | 0.024 | 0.660 |
Total number of observations | 920049 | ||
Number of reflections | 142447 | 5512 | 22924 |
<I/σ(I)> | 19.46 | 63.84 | 2.53 |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 6.459 | 6.322 | 6.296 |
CC(1/2) | 1.000 | 0.999 | 0.929 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9.5 | 293 | 100 mM CHES, 28% PEG 3000 |