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5SHU

Crystal Structure of human phosphodiesterase 10 in complex with 2-[(4-methoxy-3,5-dimethylpyridin-2-yl)methylsulfanyl]-3,5,6,7-tetrahydropyrrolo[3,2-f]benzimidazole

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyPIXEL
Collection date2010-09-18
DetectorPSI PILATUS 6M
Wavelength(s)1.000000
Spacegroup nameH 3
Unit cell lengths135.672, 135.672, 235.693
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.640 - 1.980
R-factor0.1899
Rwork0.188
R-free0.22120
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)inhouse model
RMSD bond length0.005
RMSD bond angle1.286
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]43.64043.6402.030
High resolution limit [Å]1.9808.8501.980
Rmerge0.0700.0231.030
Rmeas0.0780.0261.147
Total number of observations589138
Number of reflections11259912708347
<I/σ(I)>16.3557.621.61
Completeness [%]99.999.3100
Redundancy5.2325.055.21
CC(1/2)0.9990.9990.600
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52955-20 mg/mL protein in 25mM HEPES/NaOH pH7.5, 150mM NaCl, 50mM BME mixed 1:1 with reservoir 0.1M HEPES/NaOH pH7.5, 30% PEG550MME, 50mM MgCl2

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PDB entries from 2024-05-15

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