5SDN

PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z437584380

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	DIAMOND BEAMLINE I04-1
Synchrotron site	Diamond
Beamline	I04-1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2019-08-01
Detector	DECTRIS PILATUS 2M
Wavelength(s)	0.91589
Spacegroup name	P 21 21 21
Unit cell lengths	101.282, 117.015, 147.894
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	91.770 - 2.023
R-factor	0.2204
Rwork	0.219
R-free	0.24750
Structure solution method	FOURIER SYNTHESIS
Starting model (for MR)	5jwf
RMSD bond length	0.008
RMSD bond angle	0.940
Data reduction software	XDS
Data scaling software	Aimless
Phasing software	PHASER
Refinement software	BUSTER (2.10.3 (18-SEP-2020))

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	91.766	91.766	2.209
High resolution limit [Å]	2.023	6.288	2.023
Rmeas	0.085	0.036	1.196
Rpim	0.033	0.014	0.468
Total number of observations	554125	26328	26616
Number of reflections	82059
<I/σ(I)>	13.3	38.9	1.8
Completeness [%]	95.7	99.9	78.1
Redundancy	6.8	6.4	6.5
CC(1/2)	0.999	0.999	0.711

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	6.4	293	Morpheus Buffer system 1, 0.06M Divalents, 30% v/v Precipitant Mix 3