5SDD

PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2856434879

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	DIAMOND BEAMLINE I04-1
Synchrotron site	Diamond
Beamline	I04-1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2019-08-01
Detector	DECTRIS PILATUS 6M
Wavelength(s)	0.91589
Spacegroup name	P 21 21 21
Unit cell lengths	101.524, 117.283, 147.875
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	36.480 - 1.839
R-factor	0.2424
Rwork	0.241
R-free	0.26360
Structure solution method	FOURIER SYNTHESIS
Starting model (for MR)	5jwf
RMSD bond length	0.008
RMSD bond angle	0.910
Data reduction software	XDS
Data scaling software	Aimless
Phasing software	PHASER
Refinement software	BUSTER (2.10.4 (20-OCT-2021))

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	91.890	91.890	1.985
High resolution limit [Å]	1.839	5.546	1.839
Rmeas	0.052	0.030	0.943
Rpim	0.020	0.012	0.395
Total number of observations	769500	38563	31208
Number of reflections	118685
<I/σ(I)>	17.6	51.8	1.6
Completeness [%]	96.0	99.8	76.9
Redundancy	6.5	6.5	5.3
CC(1/2)	0.999	0.999	0.708

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	6.4	293	Morpheus Buffer system 1, 0.06M Divalents, 30% v/v Precipitant Mix 3