5SD3
Crystal Structure of Dihydrofolate Reductase from Mycobacterium tuberculosis bound to NADP and SDDC Inhibitor SDDC-1088
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-07-20 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97857 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 29.560, 67.430, 72.040 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.073 - 1.300 |
R-factor | 0.1517 |
Rwork | 0.151 |
R-free | 0.16310 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.950 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (dev_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.330 | |
High resolution limit [Å] | 1.300 | 5.810 | 1.300 |
Rmerge | 0.062 | 0.043 | 0.394 |
Rmeas | 0.067 | 0.047 | 0.448 |
Total number of observations | 236777 | ||
Number of reflections | 35541 | 470 | 2172 |
<I/σ(I)> | 17.03 | 33.46 | 3.07 |
Completeness [%] | 98.0 | 98.5 | 82.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | PACT C7 (292926c7): 200mM Sodium chloride, 100mM HEPES pH7, 20% PEG6000, 10mg/mL, cryo 20% EG, puck kpw8-8 |