5SCD

Structure of liver pyruvate kinase in complex with anthraquinone derivative 58

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	DIAMOND BEAMLINE I03
Synchrotron site	Diamond
Beamline	I03
Temperature [K]	100
Detector technology	PIXEL
Collection date	2020-09-24
Detector	DECTRIS PILATUS 6M
Wavelength(s)	0.9763
Spacegroup name	C 1 2 1
Unit cell lengths	207.725, 113.012, 188.817
Unit cell angles	90.00, 91.63, 90.00

Refinement procedure

Resolution	103.820 - 2.041
R-factor	0.2028
Rwork	0.202
R-free	0.22640
Structure solution method	MR
RMSD bond length	0.008
RMSD bond angle	0.930
Data reduction software	XDS
Data scaling software	STARANISO
Phasing software	PHASER
Refinement software	BUSTER (2.10.4 (16-JUL-2021))

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	99.262	99.262	2.300
High resolution limit [Å]	2.041	6.539	2.041
Rmerge	0.085	0.031	1.088
Rpim	0.034	0.013	0.449
Total number of observations	1204439
Number of reflections	172848	8641	8643
<I/σ(I)>	11.8	35.9	1.6
Completeness [%]	89.8
Redundancy	7	6.9	6.6
CC(1/2)	0.999	0.999	0.675

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	7.5	291	100 mM HEPES/MOPS, 10% PEG8000, 20% ethylene glycol, 10 mM phenylalanine, 20 mM sodium oxalate