5SBW
CD44 PanDDA analysis group deposition -- The hyaluronan-binding domain of CD44 in complex with Z2856434874
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2021-05-01 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91808 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 31.066, 82.133, 32.089 |
| Unit cell angles | 90.00, 117.83, 90.00 |
Refinement procedure
| Resolution | 41.070 - 1.148 |
| R-factor | 0.1654 |
| Rwork | 0.164 |
| R-free | 0.19010 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 2jcp |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.160 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | REFMAC |
| Refinement software | BUSTER (2.10.4 (20-APR-2021)) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 41.070 | 41.070 | 1.210 |
| High resolution limit [Å] | 1.150 | 3.630 | 1.150 |
| Rmerge | 0.076 | 0.037 | 0.873 |
| Rmeas | 0.091 | 0.044 | 1.163 |
| Rpim | 0.050 | 0.024 | 0.760 |
| Total number of observations | 143432 | 5449 | 13494 |
| Number of reflections | 47244 | ||
| <I/σ(I)> | 7.5 | 26.4 | 0.9 |
| Completeness [%] | 93.4 | 98.5 | 85.1 |
| Redundancy | 3 | 3.4 | 2.2 |
| CC(1/2) | 0.998 | 0.997 | 0.389 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 200mM ammonium sulphate, 100mM MES, 24% PEG 5,000 MME |
