5SBQ
CD44 PanDDA analysis group deposition -- The hyaluronan-binding domain of CD44 in complex with Z44592329
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91199 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 30.731, 81.136, 31.840 |
Unit cell angles | 90.00, 117.77, 90.00 |
Refinement procedure
Resolution | 28.170 - 0.988 |
R-factor | 0.159 |
Rwork | 0.158 |
R-free | 0.17100 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 2jcp |
RMSD bond length | 0.010 |
RMSD bond angle | 1.150 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | BUSTER (2.10.4 (20-APR-2021)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.174 | 28.174 | 1.061 |
High resolution limit [Å] | 0.988 | 2.933 | 0.988 |
Rmeas | 0.061 | 0.035 | 0.567 |
Rpim | 0.031 | 0.018 | 0.360 |
Total number of observations | 204147 | 11686 | 6285 |
Number of reflections | 59052 | ||
<I/σ(I)> | 11.3 | 37.2 | 1.5 |
Completeness [%] | 86.5 | 98.6 | 39.6 |
Redundancy | 3.5 | 4 | 2.1 |
CC(1/2) | 0.999 | 0.998 | 0.736 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 200mM ammonium sulphate, 100mM MES, 24% PEG 5,000 MME |