Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5S1M

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 Nsp3 macrodomain in complex with STK497968

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-23
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.91259
Spacegroup nameP 43
Unit cell lengths88.447, 88.447, 39.268
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution88.450 - 1.184
R-factor0.1704
Rwork0.169
R-free0.20450
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)None
RMSD bond length0.010
RMSD bond angle1.050
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwareREFMAC
Refinement softwareBUSTER (2.10.3 (20-MAY-2020))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]88.44088.4401.160
High resolution limit [Å]1.1406.1401.140
Rmerge0.1090.0521.651
Rmeas0.1190.0571.919
Rpim0.0470.0220.958
Total number of observations628813534221018
Number of reflections110821
<I/σ(I)>4.515.10.3
Completeness [%]99.999.999.1
Redundancy5.76.83.7
CC(1/2)0.9970.9970.463
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP0.1293.1530% PEG 3K

239149

PDB entries from 2025-07-23

PDB statisticsPDBj update infoContact PDBjnumon