5RZK
EPB41L3 PanDDA analysis group deposition -- Crystal Structure of the FERM domain of human EPB41L3 in complex with Z1266823232
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-08-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91589 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.620, 77.690, 99.640 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.870 - 1.840 |
R-factor | 0.2067 |
Rwork | 0.204 |
R-free | 0.25410 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6ibe |
RMSD bond length | 0.008 |
RMSD bond angle | 1.413 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 77.690 | 77.690 | 1.890 |
High resolution limit [Å] | 1.840 | 8.230 | 1.840 |
Rmerge | 0.112 | 0.023 | 1.657 |
Rmeas | 0.122 | 0.026 | 1.793 |
Rpim | 0.048 | 0.011 | 0.679 |
Total number of observations | 172274 | 2055 | 13003 |
Number of reflections | 26747 | ||
<I/σ(I)> | 11.2 | 40.8 | 1.2 |
Completeness [%] | 99.8 | 99.7 | 99.5 |
Redundancy | 6.4 | 5.6 | 6.8 |
CC(1/2) | 0.998 | 0.999 | 0.541 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 0.075M ammonium nitrate, 0.1M MES pH 6.0, 6.5% PEG 2000, 6.5% PEG 3350, 6.5% PEG 4000, 6.5% PEG 5000, 10% ethylene glycol |