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5RUU

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000438614

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-15
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.88557
Spacegroup nameP 43
Unit cell lengths88.609, 88.609, 39.409
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.630 - 1.010
R-factor0.1769
Rwork0.176
R-free0.19080
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS (0.94)
Data scaling softwareXSCALE
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.63039.6301.070
High resolution limit [Å]1.0103.0201.010
Rmerge0.0590.0361.795
Rmeas0.0640.0391.965
Total number of observations1020425
Number of reflections159833619525327
<I/σ(I)>10.9940.790.79
Completeness [%]99.799.998.2
Redundancy6.3846.2335.983
CC(1/2)0.9990.9990.595
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP9.5293100 mM CHES, 28% PEG 3000

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PDB entries from 2024-05-15

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