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5RUC

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000005878

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-15
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.88557
Spacegroup nameP 43
Unit cell lengths88.707, 88.707, 39.439
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.670 - 1.000
R-factor0.1569
Rwork0.156
R-free0.16970
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS (0.94)
Data scaling softwareXSCALE
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.67039.6701.060
High resolution limit [Å]1.0002.9901.000
Rmerge0.0540.0370.823
Rmeas0.0590.0410.914
Total number of observations1002379
Number of reflections164933641425952
<I/σ(I)>12.5237.751.35
Completeness [%]99.599.997.2
Redundancy6.0776.2875.166
CC(1/2)0.9990.9990.816
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP9.5293100 mM CHES, 28% PEG 3000

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PDB entries from 2024-05-15

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