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5RU7

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000003591110

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-15
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.88557
Spacegroup nameP 43
Unit cell lengths88.714, 88.714, 39.601
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.360 - 1.000
R-factor0.1479
Rwork0.147
R-free0.16190
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS (0.94)
Data scaling softwareXSCALE
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]44.36044.3601.060
High resolution limit [Å]1.0002.9901.000
Rmerge0.0410.0260.568
Rmeas0.0440.0290.625
Total number of observations1048054
Number of reflections165281642825786
<I/σ(I)>17.4953.752.17
Completeness [%]99.499.996.4
Redundancy6.3416.265.744
CC(1/2)1.0000.9990.908
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP9.5293100 mM CHES, 28% PEG 3000

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PDB entries from 2024-05-15

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