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5RU2

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000331715

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-15
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.88557
Spacegroup nameP 43
Unit cell lengths88.744, 88.744, 39.433
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.690 - 1.000
R-factor0.1793
Rwork0.178
R-free0.19410
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS (0.94)
Data scaling softwareXSCALE
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.69039.6901.060
High resolution limit [Å]1.0002.9901.000
Rmerge0.0320.0171.023
Rmeas0.0350.0191.126
Total number of observations1046911
Number of reflections164763641425813
<I/σ(I)>21.3188.31.58
Completeness [%]99.399.996.6
Redundancy6.3546.4135.673
CC(1/2)1.0001.0000.813
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP9.5293100 mM CHES, 28% PEG 3000

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PDB entries from 2024-05-15

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