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5RTG

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000395673

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-15
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.88557
Spacegroup nameP 43
Unit cell lengths88.701, 88.701, 39.310
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.670 - 1.010
R-factor0.1649
Rwork0.164
R-free0.18000
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS (0.94)
Data scaling softwareXSCALE
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.67039.6701.070
High resolution limit [Å]1.0103.0201.010
Rmerge0.0770.0531.583
Rmeas0.0840.0581.735
Total number of observations1010143
Number of reflections159563618125242
<I/σ(I)>8.1926.860.65
Completeness [%]99.799.998.1
Redundancy6.3316.2755.895
CC(1/2)0.9990.9980.585
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP9.5293100 mM CHES, 28% PEG 3000

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PDB entries from 2024-05-15

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