5RM1
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 helicase in complex with Z426041412
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9126 |
Spacegroup name | P 1 |
Unit cell lengths | 59.317, 70.174, 85.160 |
Unit cell angles | 102.40, 96.07, 112.75 |
Refinement procedure
Resolution | 81.330 - 1.896 |
R-factor | 0.1786 |
Rwork | 0.176 |
R-free | 0.23400 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6zsl |
RMSD bond length | 0.010 |
RMSD bond angle | 1.050 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | BUSTER (2.10.3 (20-MAY-2020)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 81.220 | 81.220 | 1.930 |
High resolution limit [Å] | 1.890 | 10.370 | 1.890 |
Rmerge | 0.075 | 0.028 | 1.235 |
Rmeas | 0.090 | 0.032 | 1.518 |
Rpim | 0.048 | 0.016 | 0.863 |
Total number of observations | 307835 | 2253 | 12412 |
Number of reflections | 92071 | ||
<I/σ(I)> | 7.6 | 32.1 | 0.8 |
Completeness [%] | 95.8 | 98.5 | 89.9 |
Redundancy | 3.3 | 3.9 | 2.9 |
CC(1/2) | 0.996 | 0.999 | 0.453 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 16 % Ethylene Glycol, 8 % PEG 8K, 0.05 M HEPES, 0.05 M MOPS, 0.03 M Sodium Nitrate, 0,03 M Sodium Phosphate, 0.03 M Ammonium Sulphate |