5RFV
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 main protease in complex with PCM-0102306
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2020-03-05 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.9126 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 112.254, 52.664, 44.535 |
| Unit cell angles | 90.00, 103.02, 90.00 |
Refinement procedure
| Resolution | 54.680 - 1.480 |
| R-factor | 0.1891 |
| Rwork | 0.187 |
| R-free | 0.22360 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6lu7 |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.568 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 54.670 | 54.670 | 1.500 |
| High resolution limit [Å] | 1.480 | 8.100 | 1.480 |
| Rmerge | 0.087 | 0.023 | 1.211 |
| Rmeas | 0.104 | 0.027 | 1.559 |
| Rpim | 0.056 | 0.014 | 0.965 |
| Total number of observations | 127943 | 1029 | 4023 |
| Number of reflections | 41372 | ||
| <I/σ(I)> | 6.2 | 27.3 | 0.6 |
| Completeness [%] | 97.9 | 99.8 | 90.5 |
| Redundancy | 3.1 | 3.6 | 2.1 |
| CC(1/2) | 0.997 | 0.999 | 0.304 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES |
