5RFJ
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 main protease in complex with PCM-0103067
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-05 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9126 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 112.164, 52.739, 44.481 |
Unit cell angles | 90.00, 102.96, 90.00 |
Refinement procedure
Resolution | 54.650 - 1.800 |
R-factor | 0.1891 |
Rwork | 0.186 |
R-free | 0.24140 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6lu7 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.428 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 54.650 | 54.650 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.194 | 0.052 | 1.649 |
Rmeas | 0.228 | 0.061 | 1.952 |
Rpim | 0.118 | 0.031 | 1.028 |
Total number of observations | 85876 | 796 | 4730 |
Number of reflections | 23587 | ||
<I/σ(I)> | 4 | 15.1 | 0.7 |
Completeness [%] | 99.8 | 99.7 | 98.9 |
Redundancy | 3.6 | 3.8 | 3.4 |
CC(1/2) | 0.986 | 0.994 | 0.284 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES |