5RES
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 main protease in complex with PCM-0102281
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-04 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9126 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 112.332, 52.696, 44.479 |
Unit cell angles | 90.00, 102.87, 90.00 |
Refinement procedure
Resolution | 54.760 - 1.650 |
R-factor | 0.1836 |
Rwork | 0.181 |
R-free | 0.22630 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6lu7 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.497 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 54.740 | 54.740 | 1.680 |
High resolution limit [Å] | 1.650 | 9.040 | 1.650 |
Rmerge | 0.119 | 0.027 | 1.373 |
Rmeas | 0.141 | 0.032 | 1.687 |
Rpim | 0.073 | 0.017 | 0.958 |
Total number of observations | 106106 | 796 | 4350 |
Number of reflections | 30036 | ||
<I/σ(I)> | 6 | 27.9 | 0.6 |
Completeness [%] | 98.3 | 99.4 | 97.2 |
Redundancy | 3.5 | 3.9 | 3 |
CC(1/2) | 0.995 | 0.982 | 0.294 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES |