5RE6
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 main protease in complex with Z54571979
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2020-02-26 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.9126 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 112.560, 52.810, 44.620 |
| Unit cell angles | 90.00, 103.20, 90.00 |
Refinement procedure
| Resolution | 47.620 - 1.870 |
| R-factor | 0.1889 |
| Rwork | 0.186 |
| R-free | 0.25050 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6lu7 |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.575 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 47.570 | 47.570 | 1.920 |
| High resolution limit [Å] | 1.870 | 8.360 | 1.870 |
| Rmerge | 0.230 | 0.053 | 2.439 |
| Rmeas | 0.269 | 0.062 | 2.823 |
| Rpim | 0.137 | 0.031 | 1.405 |
| Total number of observations | 79457 | 952 | 6056 |
| Number of reflections | 21176 | ||
| <I/σ(I)> | 4.3 | 18.1 | 0.6 |
| Completeness [%] | 99.8 | 98.9 | 100 |
| Redundancy | 3.8 | 3.6 | 3.9 |
| CC(1/2) | 0.984 | 0.996 | 0.349 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES |
