5RDP
PanDDA analysis group deposition -- Endothiapepsin ground state model 41
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.258, 73.136, 52.463 |
Unit cell angles | 90.00, 109.16, 90.00 |
Refinement procedure
Resolution | 42.790 - 0.970 |
R-factor | 0.1585 |
Rwork | 0.158 |
R-free | 0.15854 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.018 |
RMSD bond angle | 1.916 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.790 | 50.000 | 1.030 |
High resolution limit [Å] | 0.970 | 2.890 | 0.970 |
Rmerge | 0.070 | 0.055 | 1.616 |
Rmeas | 0.076 | 0.060 | 1.822 |
Total number of observations | 1203991 | ||
Number of reflections | 175588 | 7184 | 24637 |
<I/σ(I)> | 10.92 | 34.35 | 0.65 |
Completeness [%] | 96.3 | 0.983 | 0.796 |
Redundancy | 6.512 | 6.68 | 3.68 |
CC(1/2) | 0.998 | 0.995 | 0.335 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |