5RDO
PanDDA analysis group deposition -- Endothiapepsin ground state model 01
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.409, 72.794, 52.736 |
Unit cell angles | 90.00, 109.40, 90.00 |
Refinement procedure
Resolution | 42.870 - 1.060 |
R-factor | 0.1699 |
Rwork | 0.170 |
R-free | 0.16990 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.017 |
RMSD bond angle | 1.953 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.870 | 50.000 | 1.120 |
High resolution limit [Å] | 1.060 | 3.150 | 1.050 |
Rmerge | 0.070 | 0.048 | 1.813 |
Rmeas | 0.076 | 0.052 | 1.974 |
Total number of observations | 957033 | ||
Number of reflections | 138960 | 5557 | 21907 |
<I/σ(I)> | 10.63 | 33.21 | 0.81 |
Completeness [%] | 98.2 | 0.971 | 0.908 |
Redundancy | 6.512 | 5.94 | 5.83 |
CC(1/2) | 0.998 | 0.996 | 0.457 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |