5RDN
PanDDA analysis group deposition -- Endothiapepsin ground state model 47
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.196, 73.352, 52.475 |
Unit cell angles | 90.00, 109.22, 90.00 |
Refinement procedure
Resolution | 42.710 - 0.980 |
R-factor | 0.155 |
Rwork | 0.155 |
R-free | 0.15505 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.017 |
RMSD bond angle | 1.938 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.710 | 50.000 | 1.040 |
High resolution limit [Å] | 0.980 | 2.950 | 0.980 |
Rmerge | 0.075 | 0.051 | 1.360 |
Rmeas | 0.081 | 0.056 | 1.502 |
Total number of observations | 1126155 | ||
Number of reflections | 163586 | 6731 | 22505 |
<I/σ(I)> | 9.98 | 30.38 | 0.86 |
Completeness [%] | 94.6 | 0.97 | 0.766 |
Redundancy | 6.534 | 6.08 | 4.18 |
CC(1/2) | 0.998 | 0.996 | 0.470 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |