Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5RDI

PanDDA analysis group deposition -- Endothiapepsin ground state model 40

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsMAX IV BEAMLINE BioMAX
Synchrotron siteMAX IV
BeamlineBioMAX
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-30
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.827
Spacegroup nameP 1 21 1
Unit cell lengths45.184, 72.941, 52.438
Unit cell angles90.00, 109.25, 90.00
Refinement procedure
Resolution42.690 - 1.000
R-factor0.1646
Rwork0.164
R-free0.16460
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.018
RMSD bond angle1.948
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareREFMAC (5.8.0238)
Refinement softwareREFMAC (5.8.0238)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.69050.0001.060
High resolution limit [Å]1.0002.9901.000
Rmerge0.0590.0312.351
Rmeas0.0640.0332.584
Total number of observations1104322
Number of reflections158155653421862
<I/σ(I)>12.652.570.57
Completeness [%]96.00.9890.781
Redundancy6.6266.74.45
CC(1/2)0.9990.9990.237
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon