5RDH
PanDDA analysis group deposition -- Endothiapepsin ground state model 39
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.266, 72.916, 52.509 |
Unit cell angles | 90.00, 109.33, 90.00 |
Refinement procedure
Resolution | 42.750 - 0.850 |
R-factor | 0.3343 |
Rwork | 0.334 |
R-free | 0.33435 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.013 |
RMSD bond angle | 1.730 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.750 | 50.000 | 0.880 |
High resolution limit [Å] | 0.850 | 2.480 | 0.850 |
Rmerge | 0.068 | 0.039 | |
Rmeas | 0.076 | 0.043 | |
Total number of observations | 1101425 | ||
Number of reflections | 183213 | 11191 | 490 |
<I/σ(I)> | 13.25 | 35.52 | 0 |
Completeness [%] | 64.2 | 0.972 | 0.01 |
Redundancy | 5.648 | 4.82 | 0.01 |
CC(1/2) | 0.999 | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |