Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5RDF

PanDDA analysis group deposition -- Endothiapepsin ground state model 37

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsMAX IV BEAMLINE BioMAX
Synchrotron siteMAX IV
BeamlineBioMAX
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-30
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.827
Spacegroup nameP 1 21 1
Unit cell lengths45.186, 72.981, 52.489
Unit cell angles90.00, 109.12, 90.00
Refinement procedure
Resolution42.730 - 0.970
R-factor0.1685
Rwork0.168
R-free0.16847
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.018
RMSD bond angle1.980
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareREFMAC (5.8.0238)
Refinement softwareREFMAC (5.8.0238)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.73050.0001.030
High resolution limit [Å]0.9702.9000.970
Rmerge0.0640.0411.883
Rmeas0.0690.0452.089
Total number of observations1190631
Number of reflections169122715321465
<I/σ(I)>12.9245.30.67
Completeness [%]93.20.9840.695
Redundancy6.6786.643.72
CC(1/2)0.9990.9980.306
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon