5RCM
PanDDA analysis group deposition -- Endothiapepsin ground state model 07
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.256, 72.897, 52.456 |
Unit cell angles | 90.00, 109.26, 90.00 |
Refinement procedure
Resolution | 49.570 - 1.030 |
R-factor | 0.1886 |
Rwork | 0.188 |
R-free | 0.18857 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.016 |
RMSD bond angle | 1.898 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.570 | 50.000 | 1.090 |
High resolution limit [Å] | 1.030 | 3.080 | 1.030 |
Rmerge | 0.082 | 0.037 | 2.063 |
Rmeas | 0.088 | 0.040 | 2.240 |
Total number of observations | 1067438 | ||
Number of reflections | 149657 | 6035 | 24637 |
<I/σ(I)> | 10.69 | 48.26 | 0.71 |
Completeness [%] | 98.9 | 0.996 | 0.959 |
Redundancy | 6.772 | 6.95 | 6.21 |
CC(1/2) | 0.999 | 0.998 | 0.386 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |