5RBY
PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library D11b
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.240, 73.245, 52.590 |
Unit cell angles | 90.00, 109.14, 90.00 |
Refinement procedure
Resolution | 28.170 - 1.100 |
R-factor | 0.1489 |
Rwork | 0.148 |
R-free | 0.14889 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.017 |
RMSD bond angle | 2.121 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.170 | 50.000 | 1.030 |
High resolution limit [Å] | 1.100 | 2.900 | 0.970 |
Rmerge | 0.064 | 0.042 | 2.078 |
Rmeas | 0.070 | 0.046 | 2.363 |
Total number of observations | 1184259 | ||
Number of reflections | 121886 | 7197 | 25607 |
<I/σ(I)> | 10.96 | 39.16 | 0.53 |
Completeness [%] | 96.8 | 0.982 | 0.824 |
Redundancy | 6.342 | 6.37 | 3.62 |
CC(1/2) | 0.999 | 0.998 | 0.263 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |