5RBW
PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library D06b
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.228, 72.885, 52.570 |
Unit cell angles | 90.00, 109.16, 90.00 |
Refinement procedure
Resolution | 42.760 - 0.950 |
R-factor | 0.1584 |
Rwork | 0.158 |
R-free | 0.15844 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.016 |
RMSD bond angle | 1.930 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.760 | 50.000 | 1.030 |
High resolution limit [Å] | 0.950 | 2.920 | 0.980 |
Rmerge | 0.083 | 0.055 | 1.902 |
Rmeas | 0.090 | 0.060 | 2.141 |
Total number of observations | 1175592 | ||
Number of reflections | 183496 | 7036 | 25249 |
<I/σ(I)> | 9.35 | 33.64 | 0.6 |
Completeness [%] | 97.2 | 0.993 | 0.84 |
Redundancy | 6.494 | 6.71 | 3.96 |
CC(1/2) | 0.998 | 0.996 | 0.284 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |