5RBU
PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library D01a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.234, 73.321, 52.509 |
Unit cell angles | 90.00, 109.37, 90.00 |
Refinement procedure
Resolution | 49.590 - 1.010 |
R-factor | 0.1649 |
Rwork | 0.165 |
R-free | 0.16494 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.015 |
RMSD bond angle | 2.093 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.590 | 50.000 | 1.060 |
High resolution limit [Å] | 1.010 | 2.980 | 1.000 |
Rmerge | 0.065 | 0.044 | 2.333 |
Rmeas | 0.070 | 0.047 | 2.551 |
Total number of observations | 1128796 | ||
Number of reflections | 154829 | 6556 | 22925 |
<I/σ(I)> | 10.89 | 39.92 | 0.53 |
Completeness [%] | 94.7 | 0.979 | 0.807 |
Redundancy | 6.764 | 6.57 | 4.91 |
CC(1/2) | 0.998 | 0.997 | 0.333 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |