5RBQ
PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library B06b
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.058, 73.496, 52.116 |
Unit cell angles | 90.00, 109.02, 90.00 |
Refinement procedure
Resolution | 49.320 - 1.040 |
R-factor | 0.1602 |
Rwork | 0.160 |
R-free | 0.16023 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.015 |
RMSD bond angle | 1.863 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.320 | 50.000 | 1.110 |
High resolution limit [Å] | 1.040 | 3.130 | 1.040 |
Rmerge | 0.078 | 0.047 | 1.933 |
Rmeas | 0.085 | 0.052 | 2.106 |
Total number of observations | 991265 | ||
Number of reflections | 145728 | 5764 | 23274 |
<I/σ(I)> | 9.69 | 34.69 | 0.75 |
Completeness [%] | 98.8 | 0.986 | 0.939 |
Redundancy | 6.545 | 6.29 | 5.96 |
CC(1/2) | 0.998 | 0.997 | 0.347 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000 |