5RAX
PanDDA analysis group deposition -- Crystal Structure of JMJD1B in complex with FM010054a
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I02 |
| Synchrotron site | Diamond |
| Beamline | I02 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-09-30 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.92819 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 57.550, 93.730, 93.645 |
| Unit cell angles | 90.00, 108.10, 90.00 |
Refinement procedure
| Resolution | 54.880 - 2.010 |
| R-factor | 0.186 |
| Rwork | 0.184 |
| R-free | 0.23110 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6rbj |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.656 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.17) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 93.730 | 93.730 | 2.060 |
| High resolution limit [Å] | 2.010 | 8.990 | 2.010 |
| Rmerge | 0.114 | 0.025 | 1.105 |
| Rmeas | 0.135 | 0.030 | 1.309 |
| Rpim | 0.072 | 0.016 | 0.693 |
| Total number of observations | 213334 | 2634 | 15978 |
| Number of reflections | 62233 | ||
| <I/σ(I)> | 8.8 | 45.6 | 1.1 |
| Completeness [%] | 99.0 | 98.4 | 99.1 |
| Redundancy | 3.4 | 3.6 | 3.5 |
| CC(1/2) | 0.996 | 0.999 | 0.575 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 277 | 0.1M bis-tris pH 5.5 21% PEG3350 0.3M magnesium chloride |
