5RAP
PanDDA analysis group deposition -- Crystal Structure of JMJD1B in complex with FM000707a
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I02 |
| Synchrotron site | Diamond |
| Beamline | I02 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-09-30 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.92819 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 57.490, 93.600, 93.190 |
| Unit cell angles | 90.00, 107.69, 90.00 |
Refinement procedure
| Resolution | 54.830 - 1.900 |
| R-factor | 0.1799 |
| Rwork | 0.178 |
| R-free | 0.21550 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6rbj |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.548 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.17) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 93.600 | 93.600 | 1.950 |
| High resolution limit [Å] | 1.900 | 8.500 | 1.900 |
| Rmerge | 0.085 | 0.021 | 1.150 |
| Rmeas | 0.101 | 0.025 | 1.362 |
| Rpim | 0.054 | 0.014 | 0.720 |
| Total number of observations | 251777 | 3027 | 18927 |
| Number of reflections | 73347 | ||
| <I/σ(I)> | 10.8 | 50.3 | 1.2 |
| Completeness [%] | 99.1 | 97.7 | 99.4 |
| Redundancy | 3.4 | 3.6 | 3.5 |
| CC(1/2) | 0.998 | 0.999 | 0.508 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 277 | 0.1M bis-tris pH 5.5 21% PEG3350 0.3M magnesium chloride |
