5RAA
PanDDA analysis group deposition -- Crystal Structure of JMJD1B in complex with FM009990a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-09-30 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 57.290, 93.610, 93.420 |
Unit cell angles | 90.00, 107.69, 90.00 |
Refinement procedure
Resolution | 89.000 - 1.570 |
R-factor | 0.1844 |
Rwork | 0.183 |
R-free | 0.21040 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6rbj |
RMSD bond length | 0.011 |
RMSD bond angle | 1.710 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.17) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 89.000 | 89.000 | 1.610 |
High resolution limit [Å] | 1.570 | 7.020 | 1.570 |
Rmerge | 0.048 | 0.023 | 1.208 |
Rmeas | 0.057 | 0.028 | 1.434 |
Rpim | 0.031 | 0.015 | 0.763 |
Total number of observations | 442845 | 5336 | 33356 |
Number of reflections | 129720 | ||
<I/σ(I)> | 12.6 | 52.4 | 1.1 |
Completeness [%] | 99.2 | 99 | 99.7 |
Redundancy | 3.4 | 3.5 | 3.5 |
CC(1/2) | 0.999 | 0.998 | 0.535 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 277 | 0.1M bis-tris pH 5.5 21% PEG3350 0.3M magnesium chloride |