5RA8
PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N05711b in complex with MAP kinase p38-alpha
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-02-12 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.92819 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 45.887, 86.638, 126.501 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 29.730 - 1.780 |
| R-factor | 0.1832 |
| Rwork | 0.182 |
| R-free | 0.21010 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6so1 |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.544 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.17) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 29.710 | 29.710 | 1.830 |
| High resolution limit [Å] | 1.780 | 7.970 | 1.780 |
| Rmerge | 0.075 | 0.029 | 0.893 |
| Rmeas | 0.082 | 0.032 | 0.974 |
| Rpim | 0.032 | 0.013 | 0.382 |
| Total number of observations | 315698 | 3799 | 20983 |
| Number of reflections | 48854 | ||
| <I/σ(I)> | 15.3 | 44.9 | 1.8 |
| Completeness [%] | 99.4 | 97.9 | 94 |
| Redundancy | 6.5 | 6 | 6.2 |
| CC(1/2) | 0.999 | 0.999 | 0.684 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.9 | 291 | 27.5% PEG3350, 0.1 M Bis-Tris propane, pH 6.9, 50 mM ammonium sulfate, 0.2 M 1:1 magnesium chloride:magnesium sulfate, 10% glycerol |
