5R9A
PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N13838a in complex with MAP kinase p38-alpha
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.600, 86.390, 125.640 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.936 - 1.530 |
R-factor | 0.1956 |
Rwork | 0.195 |
R-free | 0.20790 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6so1 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.23) |
Phasing software | REFMAC |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.940 | 33.940 | 1.570 |
High resolution limit [Å] | 1.530 | 6.840 | 1.530 |
Rmerge | 0.066 | 0.031 | 1.393 |
Rmeas | 0.072 | 0.034 | 1.504 |
Rpim | 0.028 | 0.013 | 0.563 |
Total number of observations | 494930 | 6237 | 37657 |
Number of reflections | 74160 | ||
<I/σ(I)> | 13.6 | 42.9 | 1.3 |
Completeness [%] | 98.2 | 98.8 | 97.5 |
Redundancy | 6.7 | 6.5 | 7 |
CC(1/2) | 0.999 | 0.999 | 0.565 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.9 | 291 | 27.5% PEG3350, 0.1 M Bis-Tris propane, pH 6.9, 50 mM ammonium sulfate, 0.2 M 1:1 magnesium chloride:magnesium sulfate, 10% glycerol |