5R5M
PanDDA analysis group deposition -- Crystal Structure of human NUDT22 in complex with N14123a
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-07-02 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.92819 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 49.450, 52.320, 101.410 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 23.260 - 1.600 |
| R-factor | 0.1937 |
| Rwork | 0.191 |
| R-free | 0.23030 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5lf9 |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.524 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.26) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 23.250 | 23.250 | 1.640 |
| High resolution limit [Å] | 1.600 | 7.160 | 1.600 |
| Rmerge | 0.090 | 0.033 | 1.698 |
| Rmeas | 0.099 | 0.036 | 1.846 |
| Rpim | 0.039 | 0.014 | 0.719 |
| Total number of observations | 225802 | 2700 | 16856 |
| Number of reflections | 35495 | ||
| <I/σ(I)> | 10.9 | 41.6 | 1.1 |
| Completeness [%] | 99.9 | 97.6 | 99.9 |
| Redundancy | 6.4 | 5.9 | 6.5 |
| CC(1/2) | 0.999 | 0.999 | 0.502 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.1M HEPES pH 7.5, 0.3M sodium/potassium phosphate, 15% PEG Smear High, 20% ethylene glycol |
