5R5D
PanDDA analysis group deposition -- Crystal Structure of human NUDT22 in complex with N13564a
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-07-02 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.92819 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 49.510, 52.270, 101.630 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 50.810 - 1.650 |
| R-factor | 0.1894 |
| Rwork | 0.187 |
| R-free | 0.22590 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5lf9 |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.512 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.26) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.810 | 50.810 | 1.690 |
| High resolution limit [Å] | 1.650 | 7.380 | 1.650 |
| Rmerge | 0.086 | 0.030 | 1.747 |
| Rmeas | 0.094 | 0.033 | 1.901 |
| Rpim | 0.037 | 0.013 | 0.742 |
| Total number of observations | 207186 | 2503 | 15403 |
| Number of reflections | 32545 | ||
| <I/σ(I)> | 11.2 | 39.5 | 1.1 |
| Completeness [%] | 100.0 | 99.9 | 100 |
| Redundancy | 6.4 | 5.7 | 6.5 |
| CC(1/2) | 0.999 | 0.999 | 0.549 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.1M HEPES pH 7.5, 0.3M sodium/potassium phosphate, 15% PEG Smear High, 20% ethylene glycol |
