5QTL
PanDDA analysis group deposition -- Crystal Structure of NUDT5 in complex with GB-0804
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-04-20 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | P 1 |
| Unit cell lengths | 49.330, 59.820, 80.180 |
| Unit cell angles | 79.34, 81.47, 75.65 |
Refinement procedure
| Resolution | 78.340 - 1.730 |
| R-factor | 0.223 |
| Rwork | 0.221 |
| R-free | 0.25340 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6gru |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.502 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 78.340 | 78.340 | 1.770 |
| High resolution limit [Å] | 1.730 | 7.740 | 1.730 |
| Rmerge | 0.068 | 0.054 | 0.726 |
| Rmeas | 0.096 | 0.076 | 1.027 |
| Rpim | 0.068 | 0.054 | 0.726 |
| Total number of observations | 155169 | 1862 | 10161 |
| Number of reflections | 87469 | ||
| <I/σ(I)> | 8.3 | 20.6 | 1 |
| Completeness [%] | 96.6 | 98.9 | 95.2 |
| Redundancy | 1.8 | 1.9 | 1.6 |
| CC(1/2) | 0.986 | 0.984 | 0.639 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293.15 | 33% PEG4000, 0.2 magnesium chloride, 0.1 M Tris |
