5QRZ
PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z1998104358
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-07-23 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | P 41 2 2 |
| Unit cell lengths | 59.880, 59.880, 109.910 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 29.960 - 1.960 |
| R-factor | 0.2082 |
| Rwork | 0.205 |
| R-free | 0.27290 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6f58 |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.480 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.1) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 29.940 | 29.940 | 2.010 |
| High resolution limit [Å] | 1.960 | 8.770 | 1.960 |
| Rmerge | 0.100 | 0.045 | 2.016 |
| Rmeas | 0.104 | 0.047 | 2.098 |
| Rpim | 0.029 | 0.014 | 0.576 |
| Total number of observations | 189508 | 2230 | 14279 |
| Number of reflections | 15040 | ||
| <I/σ(I)> | 13.9 | 43.9 | 1.3 |
| Completeness [%] | 99.8 | 97.9 | 99.5 |
| Redundancy | 12.6 | 10.4 | 13.1 |
| CC(1/2) | 0.999 | 0.998 | 0.787 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 298 | 0.1 M CdCl, 0.1 M Acetate pH 4.5, 32% PEG 400 |
