5QRI
PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z2856434826
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-07-15 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | P 41 2 2 |
| Unit cell lengths | 59.957, 59.957, 110.153 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 52.720 - 1.830 |
| R-factor | 0.2189 |
| Rwork | 0.217 |
| R-free | 0.26850 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6f58 |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.604 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.1) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 55.070 | 55.070 | 1.880 |
| High resolution limit [Å] | 1.830 | 8.180 | 1.830 |
| Rmerge | 0.119 | 0.050 | 2.121 |
| Rmeas | 0.125 | 0.053 | 2.208 |
| Rpim | 0.035 | 0.016 | 0.610 |
| Total number of observations | 230062 | 2795 | 17134 |
| Number of reflections | 18491 | ||
| <I/σ(I)> | 11.2 | 33.9 | 1.2 |
| Completeness [%] | 100.0 | 99.8 | 100 |
| Redundancy | 12.4 | 10.2 | 12.8 |
| CC(1/2) | 0.998 | 0.995 | 0.772 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 298 | 0.1 M CdCl, 0.1 M Acetate pH 4.5, 32% PEG 400 |
