5QO4
Group deposition of apo datasets for PANDDA analysis - Crystal Structure of apo EcDsbA after initial refinement (apo_dataset_32)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
| Synchrotron site | Australian Synchrotron |
| Beamline | MX1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2018-04-28 |
| Detector | ADSC QUANTUM 210r |
| Wavelength(s) | 0.95370 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 117.096, 64.414, 74.686 |
| Unit cell angles | 90.00, 126.12, 90.00 |
Refinement procedure
| Resolution | 34.625 - 1.780 |
| R-factor | 0.238 |
| Rwork | 0.237 |
| R-free | 0.26390 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.244 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | MOLREP |
| Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 34.630 | 34.630 | 1.800 |
| High resolution limit [Å] | 1.770 | 9.020 | 1.770 |
| Rmerge | 0.050 | 0.025 | 0.618 |
| Rmeas | 0.058 | 0.029 | 0.716 |
| Rpim | 0.028 | 0.015 | 0.355 |
| Total number of observations | 167788 | 1240 | 5447 |
| Number of reflections | 40888 | 329 | 1431 |
| <I/σ(I)> | 11 | 27.9 | 1.3 |
| Completeness [%] | 93.1 | 92.8 | 57.3 |
| Redundancy | 4.1 | 3.8 | 3.8 |
| CC(1/2) | 0.999 | 0.998 | 0.794 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 293 | 11-13% PEG 8000 5-7.5% GLYCEROL 1 MM CUCL2 100 MM SODIUM CACODYLATE |
