5QNY
Group deposition of apo datasets for PANDDA analysis - Crystal Structure of apo EcDsbA after initial refinement (apo_dataset_24)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
| Synchrotron site | Australian Synchrotron |
| Beamline | MX1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2018-04-28 |
| Detector | ADSC QUANTUM 210r |
| Wavelength(s) | 0.95370 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 116.803, 64.562, 74.896 |
| Unit cell angles | 90.00, 126.11, 90.00 |
Refinement procedure
| Resolution | 34.675 - 1.595 |
| R-factor | 0.2283 |
| Rwork | 0.228 |
| R-free | 0.24750 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.310 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | MOLREP |
| Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 34.670 | 34.670 | 1.620 |
| High resolution limit [Å] | 1.590 | 8.730 | 1.590 |
| Rmerge | 0.035 | 0.019 | 0.650 |
| Rmeas | 0.041 | 0.022 | 0.746 |
| Rpim | 0.020 | 0.011 | 0.362 |
| Total number of observations | 244960 | 1262 | 10836 |
| Number of reflections | 58366 | 347 | 2683 |
| <I/σ(I)> | 14.5 | 38 | 1.4 |
| Completeness [%] | 97.0 | 89.9 | 91 |
| Redundancy | 4.2 | 3.6 | 4 |
| CC(1/2) | 0.999 | 0.999 | 0.789 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 293 | 11-13% PEG 8000 5-7.5% GLYCEROL 1 MM CUCL2 100 MM SODIUM CACODYLATE |
