5QNP
Group deposition of apo datasets for PANDDA analysis - Crystal Structure of apo EcDsbA after initial refinement (apo_dataset_16)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
| Synchrotron site | Australian Synchrotron |
| Beamline | MX1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2017-06-26 |
| Detector | ADSC QUANTUM 210r |
| Wavelength(s) | 0.95370 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 117.405, 62.874, 74.329 |
| Unit cell angles | 90.00, 126.53, 90.00 |
Refinement procedure
| Resolution | 37.123 - 1.670 |
| R-factor | 0.2009 |
| Rwork | 0.201 |
| R-free | 0.22370 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.189 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | MOLREP |
| Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 47.980 | 47.980 | 1.700 |
| High resolution limit [Å] | 1.670 | 8.990 | 1.670 |
| Rmerge | 0.039 | 0.020 | 0.271 |
| Rmeas | 0.044 | 0.023 | 0.312 |
| Rpim | 0.022 | 0.012 | 0.154 |
| Total number of observations | 206012 | 1242 | 9823 |
| Number of reflections | 50214 | 350 | 2476 |
| <I/σ(I)> | 24.7 | 57.5 | 4.6 |
| Completeness [%] | 99.3 | 98.6 | 96.1 |
| Redundancy | 4.1 | 3.5 | 4 |
| CC(1/2) | 0.999 | 0.999 | 0.943 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 293 | 11-13% PEG 8000 5-7.5% GLYCEROL 1 MM CUCL2 100 MM SODIUM CACODYLATE |
