5QKP
Group deposition of library data - Crystal Structure of EcDsbA after initial refinement with no ligand modelled (structure A7_3)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
| Synchrotron site | Australian Synchrotron |
| Beamline | MX1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2018-04-18 |
| Detector | ADSC QUANTUM 210r |
| Wavelength(s) | 0.95370 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 117.926, 64.460, 74.638 |
| Unit cell angles | 90.00, 125.83, 90.00 |
Refinement procedure
| Resolution | 34.805 - 1.881 |
| R-factor | 0.2303 |
| Rwork | 0.229 |
| R-free | 0.26100 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.294 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | MOLREP |
| Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 34.810 | 34.810 | 1.920 |
| High resolution limit [Å] | 1.880 | 9.020 | 1.880 |
| Rmerge | 0.039 | 0.020 | 0.571 |
| Rmeas | 0.045 | 0.023 | 0.654 |
| Rpim | 0.022 | 0.012 | 0.316 |
| Total number of observations | 148115 | 1232 | 5986 |
| Number of reflections | 35094 | 331 | 1447 |
| <I/σ(I)> | 14.3 | 38.5 | 1.8 |
| Completeness [%] | 95.1 | 93.3 | 59.7 |
| Redundancy | 4.2 | 3.7 | 4.1 |
| CC(1/2) | 0.999 | 0.999 | 0.748 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 293 | 11-13% PEG 8000 5-7.5% GLYCEROL 1 MM CUCL2 100 MM SODIUM CACODYLATE |
