5QJD
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT5 in complex with Z240297434
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-07-07 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | P 1 |
| Unit cell lengths | 48.728, 59.593, 80.188 |
| Unit cell angles | 79.65, 82.00, 76.23 |
Refinement procedure
| Resolution | 78.480 - 1.610 |
| R-factor | 0.2113 |
| Rwork | 0.210 |
| R-free | 0.23690 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6gru |
| RMSD bond length | 0.011 |
| RMSD bond angle | 1.569 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.1) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 78.500 | 78.500 | 1.650 |
| High resolution limit [Å] | 1.610 | 7.200 | 1.610 |
| Rmerge | 0.033 | 0.022 | 0.595 |
| Rmeas | 0.047 | 0.031 | 0.841 |
| Rpim | 0.033 | 0.022 | 0.595 |
| Total number of observations | 179910 | 2215 | 11312 |
| Number of reflections | 105862 | ||
| <I/σ(I)> | 9.8 | 29.8 | 0.8 |
| Completeness [%] | 95.3 | 98.6 | 92.8 |
| Redundancy | 1.7 | 1.8 | 1.5 |
| CC(1/2) | 0.994 | 0.996 | 0.672 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 33 % PEG4k, 0.2 MgCl2 and 0.1 M Tris |
