5QGV
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT7 in complex with UNUYB062989
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-05-11 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | P 3 2 1 |
| Unit cell lengths | 124.333, 124.333, 41.009 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 107.910 - 1.590 |
| R-factor | 0.1956 |
| Rwork | 0.195 |
| R-free | 0.21030 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5t3p |
| RMSD bond length | 0.011 |
| RMSD bond angle | 1.558 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 29.860 | 29.860 | 1.630 |
| High resolution limit [Å] | 1.590 | 7.120 | 1.590 |
| Rmerge | 0.050 | 0.039 | 0.824 |
| Rmeas | 0.052 | 0.041 | 0.865 |
| Rpim | 0.016 | 0.013 | 0.258 |
| Total number of observations | 547122 | 6610 | 39284 |
| Number of reflections | 48790 | ||
| <I/σ(I)> | 24.9 | 68.6 | 2.7 |
| Completeness [%] | 99.9 | 98.7 | 98.7 |
| Redundancy | 11.2 | 11.2 | 11 |
| CC(1/2) | 0.999 | 0.997 | 0.864 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.1M bis-tris pH 5.5 -- 0.1M ammonium acetate -- 5%(w/v) PEG10K |
