5QF9
PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOMB000242a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 90.671, 90.671, 107.431 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 63.395 - 1.940 |
R-factor | 0.2172 |
Rwork | 0.215 |
R-free | 0.26640 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.023 |
RMSD bond angle | 1.936 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 78.524 | 78.524 | 2.050 |
High resolution limit [Å] | 1.930 | 5.790 | 1.930 |
Rmerge | 0.083 | 0.037 | 1.216 |
Rmeas | 0.093 | 0.042 | 1.352 |
Total number of observations | 370154 | ||
Number of reflections | 73265 | 2770 | 11726 |
<I/σ(I)> | 9.88 | 32.66 | 1.02 |
Completeness [%] | 99.3 | 100 | 98.5 |
CC(1/2) | 0.998 | 0.998 | 0.738 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 277 | well solution: 0.3 M magnesium acetate, 0.1 M HEPES pH 7.5, 0.1% beta-mercaptoethanol, 13-14% PEG 8000, 2% ethanol |